INDRANIL GUHA | publications

2023

BPEX
Continuum Finite Element Analysis Generalizes In Vivo Trabecular Bone Microstructural Strength Measures between Two CT Scanners with Different Image Resolution

Guha, Indranil, Zhang, Xiaoliu, Nadeem, Syed Ahmed, Levy, Steven M, and Saha, Punam Kumar

Biomedical Physics & Engineering Express 2023

Bib HTML
@article{guha2023continuum, bibtex_show = {true}, abbr = {BPEX}, title = {Continuum Finite Element Analysis Generalizes In Vivo Trabecular Bone Microstructural Strength Measures between Two CT Scanners with Different Image Resolution}, author = {Guha, Indranil and Zhang, Xiaoliu and Nadeem, Syed Ahmed and Levy, Steven M and Saha, Punam Kumar}, journal = {Biomedical Physics \& Engineering Express}, doi = {https://doi.org/10.1088/2057-1976/acbb0a}, html = {https://doi.org/10.1088/2057-1976/acbb0a}, year = {2023} }

2022

ATS
Automated Assessment of Vertebral Fractures from Chest CT Scans Using Deep Learning

Nadeem, SA, Comellas, AP, Guha, I, Hoffman, EA, Regan, EA, and Saha, PK

In NEW INSIGHTS FROM LUNG IMAGING 2022

Bib HTML
@inproceedings{nadeem2022automated, bibtex_show = {true}, abbr = {ATS}, title = {Automated Assessment of Vertebral Fractures from Chest CT Scans Using Deep Learning}, author = {Nadeem, SA and Comellas, AP and Guha, I and Hoffman, EA and Regan, EA and Saha, PK}, booktitle = {NEW INSIGHTS FROM LUNG IMAGING}, pages = {A3317--A3317}, year = {2022}, publisher = {American Thoracic Society}, doi = {https://www.atsjournals.org/doi/pdf/10.1164/ajrccm-conference.2022.205.1_MeetingAbstracts.A3317}, html = {https://www.atsjournals.org/doi/pdf/10.1164/ajrccm-conference.2022.205.1_MeetingAbstracts.A3317} }
JBMR Plus
Computed Tomography–Based Stiffness Measures of Trabecular Bone Microstructure: Cadaveric Validation and In Vivo Application

Guha, Indranil, Zhang, Xialiou, Rajapakse, Chamith S., Letuchy, Elena M., Chang, Gregory, Janz, Kathleen F., Torner, James C., Levy, Steven M., and Saha, Punam K.

JBMR Plus 2022

Bib HTML
@article{jbmrshear, bibtex_show = {true}, abbr = {JBMR Plus}, author = {Guha, Indranil and Zhang, Xialiou and Rajapakse, Chamith S. and Letuchy, Elena M. and Chang, Gregory and Janz, Kathleen F. and Torner, James C. and Levy, Steven M. and Saha, Punam K.}, title = {Computed Tomography–Based Stiffness Measures of Trabecular Bone Microstructure: Cadaveric Validation and In Vivo Application}, journal = {JBMR Plus}, volume = {n/a}, number = {n/a}, year = {2022}, pages = {e10627}, doi = {https://doi.org/10.1002/jbm4.10627}, html = {https://asbmr.onlinelibrary.wiley.com/doi/abs/10.1002/jbm4.10627}, eprint = {https://asbmr.onlinelibrary.wiley.com/doi/pdf/10.1002/jbm4.10627} }
Med Phy
Finite element analysis of trabecular bone microstructure using CT imaging and continuum mechanical modelling

Guha, Indranil, Zhang, Xiaoliu, Rajapakse, Chamith S, Chang, Gregory, and Saha, Punam K

Medical Physics 2022

Bib HTML PDF
@article{guha2022finite, bibtex_show = {true}, abbr = {Med Phy}, title = {Finite element analysis of trabecular bone microstructure using CT imaging and continuum mechanical modelling}, author = {Guha, Indranil and Zhang, Xiaoliu and Rajapakse, Chamith S and Chang, Gregory and Saha, Punam K}, journal = {Medical Physics}, year = {2022}, publisher = {Wiley Online Library}, html = {https://aapm.onlinelibrary.wiley.com/doi/10.1002/mp.15629}, pdf = {Published-2022-Guha.pdf} }

SPIE

Clinical CT-based assessment of trabecular bone shear modulus using nonlinear finite element modelling

Guha, Indranil, Zhang, Xiaoliu, and Saha, Punam K.

In Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging 2022

Bib HTML

@inproceedings{10.1117/12.2611648,
  bibtex_show = {true},
  abbr = {SPIE},
  author = {Guha, Indranil and Zhang, Xiaoliu and Saha, Punam K.},
  title = {{Clinical CT-based assessment of trabecular bone shear modulus using nonlinear finite element modelling}},
  volume = {12036},
  booktitle = {Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging},
  editor = {Gimi, Barjor S. and Krol, Andrzej},
  organization = {International Society for Optics and Photonics},
  publisher = {SPIE},
  pages = {389 -- 396},
  keywords = {Clinical CT, Trabecular bone microstructure, Nonlinear FEA, Ash density, Shear modulus, von Mises stress},
  year = {2022},
  doi = {10.1117/12.2611648},
  html = {https://doi.org/10.1117/12.2611648}
}

SPIE
CT-based segmentation of thoracic vertebrae using deep learning and computation of the kyphotic angle

Nadeem, Syed Ahmed, Comellas, Alejandro P., Guha, Indranil, Regan, Elizabeth A., Hoffman, Eric A., and Saha, Punam K.

In Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging 2022

Bib HTML
@inproceedings{10.1117/12.2613065, bibtex_show = {true}, abbr = {SPIE}, author = {Nadeem, Syed Ahmed and Comellas, Alejandro P. and Guha, Indranil and Regan, Elizabeth A. and Hoffman, Eric A. and Saha, Punam K.}, title = {{CT-based segmentation of thoracic vertebrae using deep learning and computation of the kyphotic angle}}, volume = {12036}, booktitle = {Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging}, editor = {Gimi, Barjor S. and Krol, Andrzej}, organization = {International Society for Optics and Photonics}, publisher = {SPIE}, pages = {327 -- 334}, keywords = {Segmentation, Spine, Computed Tomography, Deep Learning, U-Net, Kyphosis}, year = {2022}, doi = {10.1117/12.2613065}, html = {https://doi.org/10.1117/12.2613065} }

2021

JBMR Plus
Quantitative CT-Based Methods for Bone Microstructural Measures and Their Relationships With Vertebral Fractures in a Pilot Study on Smokers

Zhang, Xiaoliu, Comellas, Alejandro P, Regan, Elizabeth A, Guha, Indranil, Shibli-Rahhal, Amal, Rubin, Mishaela R, DiCamillo, Paul A, Letuchy, Elena M, Barr, R Graham, Hoffman, Eric A, and others,

JBMR Plus 2021

Bib HTML PDF
@article{zhang2021quantitative, bibtex_show = {true}, abbr = {JBMR Plus}, title = {Quantitative CT-Based Methods for Bone Microstructural Measures and Their Relationships With Vertebral Fractures in a Pilot Study on Smokers}, author = {Zhang, Xiaoliu and Comellas, Alejandro P and Regan, Elizabeth A and Guha, Indranil and Shibli-Rahhal, Amal and Rubin, Mishaela R and DiCamillo, Paul A and Letuchy, Elena M and Barr, R Graham and Hoffman, Eric A and others}, journal = {JBMR Plus}, volume = {5}, number = {5}, pages = {e10484}, year = {2021}, publisher = {Wiley Online Library}, html = { https://doi.org/10.1002/jbm4.10484}, pdf = {JBMR-Plus-2021-Zhang.pdf} }
SPIE
Finite element modelling of trabecular bone microstructure using emerging CT images

Guha, Indranil, Rajapakse, Chamith S., Zhang, Xiaoliu, Chang, Gregory, and Saha, Punam

In Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging 2021

Bib HTML PDF
@inproceedings{10.1117/12.2580788, bibtex_show = {true}, abbr = {SPIE}, author = {Guha, Indranil and Rajapakse, Chamith S. and Zhang, Xiaoliu and Chang, Gregory and Saha, Punam}, title = {{Finite element modelling of trabecular bone microstructure using emerging CT images}}, volume = {11600}, booktitle = {Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging}, editor = {Gimi, Barjor S. and Krol, Andrzej}, organization = {International Society for Optics and Photonics}, publisher = {SPIE}, pages = {309 -- 316}, keywords = {Finite Element Modelling, Bone Strength, Voxel Mesh , Young's Modulus, Trabecular Bone Microstructure, MDCT Imaging}, year = {2021}, doi = {10.1117/12.2580788}, html = {https://doi.org/10.1117/12.2580788}, pdf = {FEA_Full_Paper_Guha.pdf} }
SPIE
Unsupervised GAN-CIRCLE for high-resolution reconstruction of bone microstructure from low-resolution CT scans

Guha, Indranil, Nadeem, Syed Ahmed, Zhang, Xiaoliu, Levy, Steven M., Torner, James C., and Saha, Punam K.

In Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging 2021

Bib HTML PDF
@inproceedings{10.1117/12.2581068, bibtex_show = {true}, abbr = {SPIE}, author = {Guha, Indranil and Nadeem, Syed Ahmed and Zhang, Xiaoliu and Levy, Steven M. and Torner, James C. and Saha, Punam K.}, title = {{Unsupervised GAN-CIRCLE for high-resolution reconstruction of bone microstructure from low-resolution CT scans}}, volume = {11600}, booktitle = {Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging}, editor = {Gimi, Barjor S. and Krol, Andrzej}, organization = {International Society for Optics and Photonics}, publisher = {SPIE}, pages = {331 -- 341}, keywords = {GAN-CIRCLE, Unsupervised Training, High-resolution reconstruction, Trabecular bone Microstructure, osteoporosis}, year = {2021}, doi = {10.1117/12.2581068}, html = {https://doi.org/10.1117/12.2581068}, pdf = {SPIE_2021_DL_FINAL.pdf} }

2020

PMB
A comparative study of trabecular bone micro-structural measurements using different CT modalities

Guha, Indranil, Klintström, Benjamin, Klintström, Eva, Zhang, Xiaoliu, Smedby, Örjan, Moreno, Rodrigo, and Saha, Punam K

Physics in Medicine & Biology 2020

Bib HTML PDF
@article{guha2020comparative, bibtex_show = {true}, abbr = {PMB}, title = {A comparative study of trabecular bone micro-structural measurements using different CT modalities}, author = {Guha, Indranil and Klintstr{\"o}m, Benjamin and Klintstr{\"o}m, Eva and Zhang, Xiaoliu and Smedby, {\"O}rjan and Moreno, Rodrigo and Saha, Punam K}, journal = {Physics in Medicine \& Biology}, volume = {65}, number = {23}, pages = {235029}, year = {2020}, publisher = {IOP Publishing}, url = {https://doi.org/10.1088/1361-6560/abc367}, html = {https://doi.org/10.1088/1361-6560/abc367}, pdf = {Guha_et_al_Compressed.pdf} }
SPIE
Deep learning based high-resolution reconstruction of trabecular bone microstructures from low-resolution CT scans using GAN-CIRCLE

Guha, Indranil, Nadeem, Syed Ahmed, You, Chenyu, Zhang, Xiaoliu, Levy, Steven M., Wang, Ge, Torner, James C., and Saha, Punam K.

In Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and Functional Imaging 2020

Bib HTML PDF
@inproceedings{SPIE2020, bibtex_show = {true}, abbr = {SPIE}, author = {Guha, Indranil and Nadeem, Syed Ahmed and You, Chenyu and Zhang, Xiaoliu and Levy, Steven M. and Wang, Ge and Torner, James C. and Saha, Punam K.}, title = {{Deep learning based high-resolution reconstruction of trabecular bone microstructures from low-resolution CT scans using GAN-CIRCLE}}, volume = {11317}, booktitle = {Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and Functional Imaging}, editor = {Krol, Andrzej and Gimi, Barjor S.}, organization = {International Society for Optics and Photonics}, publisher = {SPIE}, pages = {204 -- 214}, keywords = {Low- to High-Resolution Image Reconstruction , Trabecular Bone Microstructures , Generative Adversarial Network, Cycle Consistency, GAN-CIRCLE}, year = {2020}, doi = {10.1117/12.2549318}, url = {https://doi.org/10.1117/12.2549318}, html = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7085412/}, pdf = {113170U.pdf} }

2018

ISVC

A New Algorithm for Local Blur-Scale Computation and Edge Detection

Guha, Indranil, and Saha, Punam K.

In Advances in Visual Computing 2018

Bib HTML PDF

@inproceedings{10.1007/978-3-030-03801-4_52,
  bibtex_show = {true},
  abbr = {ISVC},
  author = {Guha, Indranil and Saha, Punam K.},
  editor = {Bebis, George and Boyle, Richard and Parvin, Bahram and Koracin, Darko and Turek, Matt and Ramalingam, Srikumar and Xu, Kai and Lin, Stephen and Alsallakh, Bilal and Yang, Jing and Cuervo, Eduardo and Ventura, Jonathan},
  title = {A New Algorithm for Local Blur-Scale Computation and Edge Detection},
  booktitle = {Advances in Visual Computing},
  year = {2018},
  publisher = {Springer International Publishing},
  address = {Cham},
  pages = {598--606},
  isbn = {978-3-030-03801-4},
  url = {https://doi.org/10.1007/978-3-030-03801-4_52},
  html = {https://link.springer.com/chapter/10.1007/978-3-030-03801-4_52},
  pdf = {ICACNI_2016_paper_283.pdf}
}

SPRINGER
Design of Cerebrovascular Phantoms Using Fuzzy Distance Transform-based Geodesic Paths

Guha, Indranil, Das, Nirmal, Rakshit, Pranati, Nasipuri, Mita, Saha, Punam K., and Basu, Subhadip

In Progress in Intelligent Computing Techniques: Theory, Practice, and Applications 2018

Bib HTML PDF
@inproceedings{10.1007/978-981-10-3373-5_36, bibtex_show = {true}, abbr = {SPRINGER}, author = {Guha, Indranil and Das, Nirmal and Rakshit, Pranati and Nasipuri, Mita and Saha, Punam K. and Basu, Subhadip}, editor = {Sa, Pankaj Kumar and Sahoo, Manmath Narayan and Murugappan, M. and Wu, Yulei and Majhi, Banshidhar}, title = {Design of Cerebrovascular Phantoms Using Fuzzy Distance Transform-based Geodesic Paths}, booktitle = {Progress in Intelligent Computing Techniques: Theory, Practice, and Applications}, year = {2018}, publisher = {Springer Singapore}, address = {Singapore}, pages = {359--367}, isbn = {978-981-10-3373-5}, url = {https://link.springer.com/chapter/10.1007/978-981-10-3373-5_36}, html = {https://link.springer.com/chapter/10.1007/978-981-10-3373-5_36}, pdf = {Blur-Scale-ISVC.pdf} }
SPIE
Segmentation and assessment of structural plasticity of hippocampal dendritic spines from 3D confocal light microscopy

Basu, Subhadip, Saha, Punam Kumar, Baczynska, Ewa, Roszkowska, Matylda, Magnowska, Marta, Das, Nirmal, Guha, Indranil, and Wlodarczyk, Jakub

In Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging 2018

Bib HTML PDF
@inproceedings{10.1117/12.2292924, bibtex_show = {true}, abbr = {SPIE}, author = {Basu, Subhadip and Saha, Punam Kumar and Baczynska, Ewa and Roszkowska, Matylda and Magnowska, Marta and Das, Nirmal and Guha, Indranil and Wlodarczyk, Jakub}, title = {{Segmentation and assessment of structural plasticity of hippocampal dendritic spines from 3D confocal light microscopy}}, volume = {10578}, booktitle = {Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging}, editor = {Gimi, Barjor and Krol, Andrzej}, organization = {International Society for Optics and Photonics}, publisher = {SPIE}, pages = {91 -- 99}, keywords = {Neuroimage analysis, Dendritic spine segmentation, Spine plasticity assessment, 3D segmentation and assessment, Confocal Light Microscopy}, year = {2018}, doi = {10.1117/12.2292924}, html = {https://doi.org/10.1117/12.2292924}, pdf = {SPIE_Final_Paper.pdf} }

2017

ICACNI
A semiautomatic approach for segmentation of carotid vasculature from patients’ CTA images

Guha, Indranil, Das, Nirmal, Rakshit, Pranati, Nasipuri, Mita, Saha, Punam K, and Basu, Subhadip

Innovations in Systems and Software Engineering 2017

Bib HTML PDF
@article{guha2017semiautomatic, bibtex_show = {true}, abbr = {ICACNI}, title = {A semiautomatic approach for segmentation of carotid vasculature from patients’ CTA images}, author = {Guha, Indranil and Das, Nirmal and Rakshit, Pranati and Nasipuri, Mita and Saha, Punam K and Basu, Subhadip}, journal = {Innovations in Systems and Software Engineering}, volume = {13}, number = {4}, pages = {243--250}, year = {2017}, publisher = {Springer}, url = {https://link.springer.com/article/10.1007/s11334-017-0289-y#citeas}, html = {https://link.springer.com/article/10.1007/s11334-017-0289-y#citeas}, pdf = {Guha2017_Article_ASemiautomaticApproachForSegme.pdf} }